ngs jobs in San Diego

Automation QA Engineer for a genomics/bioinformatics project in San Diego. The role requires 3+ years of QA/test automation experience with Python, developing and maintaining automated test suites using pytest, unittest, or Robot Framework.…See more Responsibilities include functional, integration, and regression testing of genomics and sequencing software; validating NGS data and sample-to-result traceability; testing LIMS integrations and laboratory workflows; and collaborating with wet-lab and dry-lab teams to create real-world test scenarios. Knowledge of NGS, LIMS, bioinformatics, and life-sciences compliance is highly valuable.

The Data Scientist will support early-stage pharmaceutical programs by compiling, harmonizing, and ingesting omics datasets (RNA-Seq, DNA-Seq, scRNA-Seq, copy number) from multiple internal and external sources. The role requires developing automated scripts for dataset harmonization, loading formatted data into a proprietary interface, and performing quality control assessments.…See more The candidate must have strong coding skills in R and/or Python, bioinformatics experience, and a background working with NGS data.

Test and validate bioinformatics data pipelines handling genomic sequencing workflows (FASTQ, BAM, VCF formats). Write Python scripts to automate testing, manage code with Git, and deploy/monitor pipelines on cloud platforms (AWS, GCP, Azure) using CI/CD tools.…See more Troubleshoot pipeline failures and ensure data integrity across NGS (Next-Generation Sequencing) processing stages.

The Bioinformatics Test Engineer will design and execute comprehensive testing strategies for NGS (Next Generation Sequencing) data pipelines, including alignment, variant calling, and annotation workflows. Responsibilities include data validation, regression testing, automated test script development in Python, and collaboration with CI/CD pipelines and cloud-based systems.…See more The role requires deep knowledge of NGS file formats (FASTQ, BAM, VCF), proficiency in Python scripting, hands-on experience with Git and CI/CD tools, and familiarity with cloud platforms (AWS/GCP/Azure) to ensure data accuracy and pipeline reliability.

Global Support Engineer will provide Level 2/3 technical support for complex instrumentation in a biotech environment, diagnosing issues across mechanical, fluidics, optics, electronics, and firmware subsystems. The role includes triaging escalations, authoring technical documentation and service bulletins, supporting new product introductions, and serving as an on-site diagnostic resource to field service teams.…See more Requires a bachelor's degree in engineering and 2–5 years of field service or technical support experience in instrumentation or regulated biotech/medical device industries.

Senior Software Engineer responsible for designing, building, and maintaining secure, fault-tolerant distributed systems for sequencing data transfer, storage, and management. Contribute to CI/CD pipelines, evaluate component designs, collaborate across software teams, and drive innovation while troubleshooting complex customer issues.…See more Required expertise in C# and .NET/Core with 5+ years of software development experience; strong background in distributed systems patterns, testing frameworks, and quality practices essential.